[INFO] cloning repository https://github.com/nucleohub/biobit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/nucleohub/biobit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnucleohub%2Fbiobit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnucleohub%2Fbiobit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 7a6a47984c7a2a625b8d5c36543097e49b23504e
[INFO] fixing nucleohub/biobit against try#622891a4e29178280638a6b63a8908bde2c0c854+cargoflags=-Zfix-edition=start=2015 for pr-157817-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnucleohub%2Fbiobit" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-4-tc1/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/nucleohub/biobit
[INFO] finished tweaking git repo https://github.com/nucleohub/biobit
[INFO] tweaked toml for git repo https://github.com/nucleohub/biobit written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/nucleohub/biobit on toolchain 622891a4e29178280638a6b63a8908bde2c0c854
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/biomancy/substratum`
[INFO] [stderr]      Locking 182 packages to latest Rust 1.96.0 compatible versions
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bitcode_derive v0.6.9
[INFO] [stderr]   Downloaded mintex v0.1.4
[INFO] [stderr]   Downloaded never-say-never v6.6.666
[INFO] [stderr]   Downloaded bitcode v0.6.9
[INFO] [stderr]   Downloaded impl-tools-lib v0.12.0
[INFO] [stderr]   Downloaded anymap3 v1.1.0
[INFO] [stderr]   Downloaded time-core v0.1.9
[INFO] [stderr]   Downloaded higher-kinded-types v0.3.0
[INFO] [stderr]   Downloaded proc-macro-error-attr3 v3.0.2
[INFO] [stderr]   Downloaded noodles v0.111.0
[INFO] [stderr]   Downloaded impl-tools v0.12.0
[INFO] [stderr]   Downloaded noodles-core v0.20.0
[INFO] [stderr]   Downloaded target-lexicon v0.13.5
[INFO] [stderr]   Downloaded noodles-csi v0.56.0
[INFO] [stderr]   Downloaded pyo3-macros v0.29.0
[INFO] [stderr]   Downloaded pyo3-build-config v0.29.0
[INFO] [stderr]   Downloaded arrayvec v0.7.7
[INFO] [stderr]   Downloaded noodles-bgzf v0.47.0
[INFO] [stderr]   Downloaded defmt-macros v1.1.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.45.0
[INFO] [stderr]   Downloaded proc-macro-error3 v3.0.2
[INFO] [stderr]   Downloaded defmt v1.1.0
[INFO] [stderr]   Downloaded noodles-bam v0.90.0
[INFO] [stderr]   Downloaded rstar v0.13.0
[INFO] [stderr]   Downloaded noodles-sam v0.85.0
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.29.0
[INFO] [stderr]   Downloaded jiff-static v0.2.29
[INFO] [stderr]   Downloaded pyo3-ffi v0.29.0
[INFO] [stderr]   Downloaded itertools v0.15.0
[INFO] [stderr]   Downloaded zlib-rs v0.6.4
[INFO] [stderr]   Downloaded time v0.3.51
[INFO] [stderr]   Downloaded jiff v0.2.29
[INFO] [stderr]   Downloaded pyo3 v0.29.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3a6becf2bc8dde7f3fa57ede90e4f284e72d296796fc446bbb1e2c7cc0530151" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 67eabbcdae38ed5c15502d3d1892230da963722e803b2232867c98fc89913bba
[INFO] running `Command { std: "docker" "start" "67eabbcdae38ed5c15502d3d1892230da963722e803b2232867c98fc89913bba", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "67eabbcdae38ed5c15502d3d1892230da963722e803b2232867c98fc89913bba" "/opt/rustwide/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "67eabbcdae38ed5c15502d3d1892230da963722e803b2232867c98fc89913bba", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=" "-e" "RUSTDOCFLAGS=" "-w" "/opt/rustwide/workdir" "--user" "0:0" "67eabbcdae38ed5c15502d3d1892230da963722e803b2232867c98fc89913bba" "/opt/rustwide/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "fix" "--allow-no-vcs" "--allow-dirty" "--frozen" "--all" "--all-targets" "--message-format=json" "-Zfix-edition=start=2015", kill_on_drop: false }`
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling syn v2.0.118
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling proc-macro-error-attr3 v3.0.2
[INFO] [stderr]     Checking bytemuck v1.25.0
[INFO] [stderr]    Compiling macro_rules_attribute-proc_macro v0.2.2
[INFO] [stderr]     Checking never-say-never v6.6.666
[INFO] [stderr]    Compiling convert_case v0.10.0
[INFO] [stderr]     Checking anymap3 v1.1.0
[INFO] [stderr]     Checking either v1.16.0
[INFO] [stderr]     Checking bytes v1.12.0
[INFO] [stderr]     Checking hashbrown v0.17.1
[INFO] [stderr]    Compiling zerocopy v0.8.52
[INFO] [stderr]     Checking zlib-rs v0.6.4
[INFO] [stderr]     Checking lexical-util v1.0.7
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]     Checking smallvec v1.15.2
[INFO] [stderr]    Compiling proc-macro-error3 v3.0.2
[INFO] [stderr]     Checking itertools v0.15.0
[INFO] [stderr]     Checking noodles-core v0.20.0
[INFO] [stderr]     Checking bit-vec v0.9.1
[INFO] [stderr]     Checking bitflags v2.13.0
[INFO] [stderr]    Compiling target-lexicon v0.13.5
[INFO] [stderr]     Checking log v0.4.33
[INFO] [stderr]     Checking lexical-parse-integer v1.0.6
[INFO] [stderr]     Checking lexical-write-integer v1.0.6
[INFO] [stderr]     Checking rayon v1.12.0
[INFO] [stderr]     Checking parking_lot_core v0.9.12
[INFO] [stderr]     Checking siphasher v1.0.3
[INFO] [stderr]    Compiling bigdecimal v0.4.10
[INFO] [stderr]     Checking macro_rules_attribute v0.2.2
[INFO] [stderr]     Checking parking_lot v0.12.5
[INFO] [stderr]     Checking higher-kinded-types v0.3.0
[INFO] [stderr]    Compiling rust_decimal v1.42.1
[INFO] [stderr]     Checking lexical-parse-float v1.0.6
[INFO] [stderr]    Compiling chrono-tz v0.10.4
[INFO] [stderr]     Checking phf_shared v0.12.1
[INFO] [stderr]     Checking phf v0.12.1
[INFO] [stderr]     Checking lexical-write-float v1.0.6
[INFO] [stderr]     Checking arrayvec v0.7.7
[INFO] [stderr]     Checking time-core v0.1.9
[INFO] [stderr]     Checking indexmap v2.14.0
[INFO] [stderr]     Checking num-conv v0.2.2
[INFO] [stderr]     Checking deranged v0.5.8
[INFO] [stderr]     Checking jiff v0.2.29
[INFO] [stderr]     Checking uuid v1.23.3
[INFO] [stderr]    Compiling heapless v0.8.0
[INFO] [stderr]     Checking hash32 v0.3.1
[INFO] [stderr]     Checking bitvec v1.1.1
[INFO] [stderr]    Compiling serde_json v1.0.150
[INFO] [stderr]     Checking object v0.37.3
[INFO] [stderr]     Checking thousands v0.2.0
[INFO] [stderr]     Checking mintex v0.1.4
[INFO] [stderr]     Checking by_address v1.2.1
[INFO] [stderr]    Compiling pyo3-build-config v0.29.0
[INFO] [stderr]     Checking lexical-core v1.0.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking chrono v0.4.45
[INFO] [stderr]     Checking ordered-float v5.3.0
[INFO] [stderr]     Checking noodles-bgzf v0.47.0
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]     Checking rstar v0.13.0
[INFO] [stderr]     Checking time v0.3.51
[INFO] [stderr]     Checking noodles-csi v0.56.0
[INFO] [stderr]     Checking noodles-bgzf v0.45.0
[INFO] [stderr]     Checking noodles-sam v0.85.0
[INFO] [stderr]    Compiling pyo3-ffi v0.29.0
[INFO] [stderr]    Compiling pyo3 v0.29.0
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking num v0.4.3
[INFO] [stderr]     Checking noodles-bam v0.90.0
[INFO] [stderr]     Checking noodles v0.111.0
[INFO] [stderr]    Compiling impl-tools-lib v0.12.0
[INFO] [stderr]    Compiling pyo3-macros-backend v0.29.0
[INFO] [stderr]     Checking ahash v0.8.12
[INFO] [stderr]     Checking backtrace v0.3.76
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling bitcode_derive v0.6.9
[INFO] [stderr]    Compiling derive_more-impl v2.1.1
[INFO] [stderr]    Compiling derive-getters v0.5.0
[INFO] [stderr]    Compiling impl-tools v0.12.0
[INFO] [stderr]     Checking bitcode v0.6.9
[INFO] [stderr]     Checking substratum-compress v0.0.1 (https://github.com/biomancy/substratum?rev=5592a2a56abaf8ee767b2a4b673fcb106b6e397c#5592a2a5)
[INFO] [stderr]    Compiling pyo3-macros v0.29.0
[INFO] [stderr]     Checking dhat v0.3.3
[INFO] [stderr]     Checking derive_more v2.1.1
[INFO] [stderr]     Checking biobit-core-rs v0.0.11 (/opt/rustwide/workdir/modules/core/rs)
[INFO] [stderr]     Checking biobit-collections-rs v0.0.11 (/opt/rustwide/workdir/modules/collections/rs)
[INFO] [stderr]     Checking biobit-io-rs v0.0.11 (/opt/rustwide/workdir/modules/io/rs)
[INFO] [stderr]     Checking biobit-alignment-rs v0.0.11 (/opt/rustwide/workdir/modules/alignment/rs)
[INFO] [stderr]     Checking biobit-seqproj-rs v0.0.11 (/opt/rustwide/workdir/modules/toolkit/seqproj/rs)
[INFO] [stdout] error: environment variable `BIOBIT_RESOURCES` not defined at compile time
[INFO] [stdout]    --> modules/io/rs/src/bed/reader.rs:472:38
[INFO] [stdout]     |
[INFO] [stdout] 472 |             let file = PathBuf::from(env!("BIOBIT_RESOURCES"))
[INFO] [stdout]     |                                      ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: use `std::env::var("BIOBIT_RESOURCES")` to read the variable at run time
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: environment variable `BIOBIT_RESOURCES` not defined at compile time
[INFO] [stdout]    --> modules/io/rs/src/bed/writer.rs:125:38
[INFO] [stdout]     |
[INFO] [stdout] 125 |             let path = PathBuf::from(env!("BIOBIT_RESOURCES"))
[INFO] [stdout]     |                                      ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: use `std::env::var("BIOBIT_RESOURCES")` to read the variable at run time
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: environment variable `BIOBIT_RESOURCES` not defined at compile time
[INFO] [stdout]    --> modules/io/rs/src/fasta/indexed_reader.rs:512:38
[INFO] [stdout]     |
[INFO] [stdout] 512 |             let path = PathBuf::from(env!("BIOBIT_RESOURCES"))
[INFO] [stdout]     |                                      ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: use `std::env::var("BIOBIT_RESOURCES")` to read the variable at run time
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: environment variable `BIOBIT_RESOURCES` not defined at compile time
[INFO] [stdout]    --> modules/io/rs/src/fasta/indexed_reader.rs:531:38
[INFO] [stdout]     |
[INFO] [stdout] 531 |             let path = PathBuf::from(env!("BIOBIT_RESOURCES"))
[INFO] [stdout]     |                                      ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: use `std::env::var("BIOBIT_RESOURCES")` to read the variable at run time
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: environment variable `BIOBIT_RESOURCES` not defined at compile time
[INFO] [stdout]    --> modules/io/rs/src/fasta/reader.rs:293:38
[INFO] [stdout]     |
[INFO] [stdout] 293 |             let path = PathBuf::from(env!("BIOBIT_RESOURCES"))
[INFO] [stdout]     |                                      ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: use `std::env::var("BIOBIT_RESOURCES")` to read the variable at run time
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: environment variable `BIOBIT_RESOURCES` not defined at compile time
[INFO] [stdout]   --> modules/io/rs/src/fasta/writer.rs:72:38
[INFO] [stdout]    |
[INFO] [stdout] 72 |             let path = PathBuf::from(env!("BIOBIT_RESOURCES"))
[INFO] [stdout]    |                                      ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: use `std::env::var("BIOBIT_RESOURCES")` to read the variable at run time
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking biobit-repeto-rs v0.0.11 (/opt/rustwide/workdir/modules/toolkit/repeto/rs)
[INFO] [stderr]     Checking biobit-countit-rs v0.0.11 (/opt/rustwide/workdir/modules/toolkit/countit/rs)
[INFO] [stderr]     Checking biobit-reaper-rs v0.0.11 (/opt/rustwide/workdir/modules/toolkit/reaper/rs)
[INFO] [stderr]     Checking biobit-reat-rs v0.0.11 (/opt/rustwide/workdir/modules/toolkit/reat/rs)
[INFO] [stderr]     Checking biobit-countit-bench v0.0.11 (/opt/rustwide/workdir/modules/toolkit/countit/benches)
[INFO] [stderr] error: could not compile `biobit-io-rs` (lib test) due to 6 previous errors
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "67eabbcdae38ed5c15502d3d1892230da963722e803b2232867c98fc89913bba", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "67eabbcdae38ed5c15502d3d1892230da963722e803b2232867c98fc89913bba", kill_on_drop: false }`
[INFO] [stdout] 67eabbcdae38ed5c15502d3d1892230da963722e803b2232867c98fc89913bba
